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picture1_2017 05 01 Brinkley


 137x       Filetype PPTX       File size 2.81 MB       Source: www.facebase.org


File: 2017 05 01 Brinkley
goals create an ontology for use by facebase standardized terms for annotation retrieval by keyword search relations representation of knowledge to allow semantic integration ocdm human cho chdo o c ...

icon picture PPTX Filetype Power Point PPTX | Posted on 31 Aug 2022 | 3 years ago
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            Goals
  • Create an ontology for use by FaceBase
  • Standardized terms 
   –for annotation
   –retrieval by keyword search
  • Relations 
   –representation of knowledge
   –to allow semantic integration
  OCDM
                    Human
                       CHO
                           CHDO
            O                           C
           M   s                      m  HZ
          M   ing       CHMO           ap M
         CH  p                          pi O
             p                      C   ng
            a   O                   H    s
           m   M                     Z
               3                      2
              H                       MO
             C           CET
     Mouse                         Zebrafish
      CMO               CMZMO         CZO
          CMDO                            CZDO
                        mappings
        CMMO           CMZ2MO          CZMO
                            Facebase 2 Milestones
 Year  Task                                                    Dates
        1. Conversion to OWL
            a. CHO to OWL                                      May 1, 2014 –  Aug 1, 2014
            b. OCDM to OWL                                     June 1, 2014 – July 1, 2014
            c. Review and Testing                              July 1, 2014 – Aug 1, 2014
  1         d. Ongoing methodology                             Aug 1, 2014 – Ongoing
  1
       2. Canonical musculoskeletal system (MS) of head
            a. CHO (Human)                                     May 1, 2014 – Aug 31, 2014
            b. CMO (Mouse)                                     Sept 1, 2014 – Dec, 31, 2014
            c. CZO (Zebrafish)                                 Jan 1, 2015 – July 31, 2015
            d. Termlists for Hub                          Feb 15, 2015 -- Ongoing
        
     2 3. Embryonic development of MS of head
     2
            a. CHDO (Human)                                    Aug 1, 2015 – Nov 30, 2015
            b. CMDO (Mouse)                                    Dec 1, 2015 – March 31, 2016
            c. CZDO (Zebrafish)                                April 1, 2016 – Sept 30, 2016
  3    4. Anatomy mappings
  3
            a. CHO with CMO (CHMMO)                            Oct 1, 2016 – Jan 31, 2017
            b. CHO with CZO   (CHZMO)                          Feb 1, 2017 – June 30, 2017
        
            Topics
  • Craniofacial Zebrafish Developmental Ontology (CZDO)
  • Craniofacial Human Mouse Mapping Ontology 
   (CHMMO)
  • Craniofacial Human Zebrafish Mapping Ontology 
   (CHZMO)
  • Hub metadata terms
  • Ongoing Methodology
  • Year 4 plans and beyond
  • Potential Applications
         Craniofacial Zebrafish Developmental Ontology (CZDO) 
           - subset of Craniofacial Zebrafish Ontology
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...Goals create an ontology for use by facebase standardized terms annotation retrieval keyword search relations representation of knowledge to allow semantic integration ocdm human cho chdo o c m s hz ing chmo ap ch p pi ng a h z mo cet mouse zebrafish cmo cmzmo czo cmdo czdo mappings cmmo czmo milestones year task dates conversion owl may aug b june july review and testing d ongoing methodology canonical musculoskeletal system ms head sept dec jan termlists hub feb embryonic development nov march april anatomy with chmmo oct chzmo topics craniofacial developmental mapping metadata plans beyond potential applications subset...

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